- Macfarlane Burnet Centre for Medical Research
- Media Preparation Unit, The University of Melbourne
- Medical Biology Department
- see Department of Medical Biology, The University of Melbourne
- Medical Faculty
- see Faculty of Medicine, Dentistry and Health Sciences (1991 - ), The University of Melbourne
- Medical History Museum, The University of Melbourne
- Medical School Committee (1862 - 1876), The University of Melbourne
- Medicine Department: Austin and Repatriation Medical Centre
- see Department of Medicine: Austin and Repatriation Medical Centre, The University of Melbourne
- Medicine Department: St Vincent's Hospital/Geelong Hospital
- see Department of Medicine: St Vincent's Hospital/Geelong Hospital (1957 - ), The University of Melbourne
- Medicine Department: The Royal Melbourne Hospital/Western Hospital
- see Department of Medicine: The Royal Melbourne Hospital/Western Hospital (1955 - ), The University of Melbourne
- Melbourne Dental Students' Society, The University of Melbourne
- Melbourne Hospital
- see Royal Melbourne Hospital and Western Hospital Clinical School
- Melbourne Medical School (1862 - ), The University of Melbourne
- Melbourne University Medical Society
- see University of Melbourne Medical Society (1982 - ), School of Medicine
- Mental Health Research Institute of Victoria (1956 - )
- Mercy Hospital for Women
- Microbiological Diagnostic Unit, The University of Melbourne
- Microbiology and Immunology Department
- see Department of Microbiology and Immunology (1996 - ), The University of Melbourne
- The Morgan Centre, The University of Melbourne
- Morgan Centre
- see The Morgan Centre, The University of Melbourne
- Murdoch Children's Research Institute, Royal Children's Hospital
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